Energy & Environment

Punnett Square Calculator (Monohybrid Cross)

Build a 2x2 Punnett square for a single-gene cross. You enter two parent genotypes and see every offspring combination with genotype and phenotype ratios.

Reviewed and updated

How to use
  1. Enter the first parent's genotype (for example Aa).
  2. Enter the second parent's genotype.
Estimates based on typical values; your real usage and rates will vary.
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The four crosses and what each one gives

A monohybrid cross tracks one gene with a dominant allele (A) and a recessive one (a). Each parent passes one allele, so the grid has four equally likely boxes. The parents' genotypes decide the ratio.

CrossGenotype ratioPhenotype ratio
Aa × Aa1 AA : 2 Aa : 1 aa3 dominant : 1 recessive
Aa × aa1 Aa : 1 aa1 dominant : 1 recessive
AA × aaall Aaall dominant
AA × Aa1 AA : 1 Aaall dominant
aa × aaall aaall recessive

The Aa × aa cross is the classic "test cross" — a 1:1 result tells you the dominant-looking parent was a heterozygote, not AA.

The 2×2 grid for a heterozygous cross

For Aa × Aa, each parent contributes A or a with equal chance. Filling the four boxes gives one AA, two Aa and one aa.

Aa
AAAAa
aAaaa
P(dominant) = P(AA) + P(Aa) = ¼ + ½ = ¾ (75%)

Where the ratio breaks down

  • Incomplete dominance. If the heterozygote shows a blended trait (red × white = pink), the phenotype ratio matches the genotype ratio: 1:2:1, not 3:1.
  • Codominance. Both alleles show at once (like blood type AB), so again all three genotypes look different.
  • Linked genes. A single Punnett square assumes independent assortment; genes close together on the same chromosome do not sort freely.

Common questions

Why does Aa x Aa give a 3:1 ratio?

The 2x2 grid produces one AA, two Aa and one aa. Since A is dominant, the three offspring carrying at least one A all show the dominant trait, and only aa shows the recessive one. That is 3 dominant to 1 recessive.

What is the difference between genotype and phenotype ratio?

Genotype is the allele combination, phenotype is the visible trait. Aa x Aa gives a 1:2:1 genotype ratio (AA:Aa:aa) but a 3:1 phenotype ratio, because AA and Aa look the same when A is dominant.

Do the ratios guarantee the outcome in a real litter?

No. A 3:1 ratio is the probability per offspring, not a fixed count. In a litter of four you might see 4:0 or 2:2 by chance. The predicted ratio only shows up reliably across large numbers.

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